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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11241094_11255553_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11241094 - 11255553
Intron Length:
14460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAATGATTAACT
Flanking Amino Acid:
GLSEDDLRQLLALKGSNYAG
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
53.1
45.3
Major BPS
76.8
0.67
1
66
40.9
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
24.8
-2.9
3
26.3
37.9
Minor BPS
60
0.39
2
79.7
41.6

Associated Gene:

Gene:
NADK2
Ensembl Gene ID:
ENSAPLG00000007886
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008197
11240674 - 11270435
29762