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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11257324_11258643_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11257324 - 11258643
Intron Length:
1320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCATCA
Flanking Amino Acid:
PVIGVNTDPERSEGHLCLPV
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
56.2
0.19
2.1
77.26
39.3

Associated Gene:

Gene:
NADK2
Ensembl Gene ID:
ENSAPLG00000007886
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008197
11240674 - 11270435
29762