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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11262067_11262976_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11262067 - 11262976
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTTCA
5'SS Class:
major
3'SS Sequence:
TCAATATCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTGATTTAACA
Flanking Amino Acid:
AHINERFQDQRSDVSGPHLL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.4
35.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
69.1
0.43
0.9
63
38.2
Minor 5ss
40.8
-1
3
49.9
40.8
Minor BPS
69.6
0.61
1.6
80.03
36.1

Associated Gene:

Gene:
NADK2
Ensembl Gene ID:
ENSAPLG00000007886
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008197
11240674 - 11270435
29762