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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11265490_11267094_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11265490 - 11267094
Intron Length:
1605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TATTGCTTAGCA
Flanking Amino Acid:
NVCTGTGSKAWSYNINKVAN
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
75.8
0.58
0.9
69.3
36.9
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
62.5
0.39
2
76.73
40.3

Associated Gene:

Gene:
NADK2
Ensembl Gene ID:
ENSAPLG00000007886
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008197
11240674 - 11270435
29762