About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11267151_11267236_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11267151 - 11267236
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTGGCTCAACA
Flanking Amino Acid:
NQAVEEILNIAKKHGSLNTP
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.1
31.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
68.3
0.41
1
62.2
38.7
Minor 5ss
27
-2.6
3
31.7
42.6
Minor BPS
50.5
0.01
2.1
67.11
45.4

Associated Gene:

Gene:
NADK2
Ensembl Gene ID:
ENSAPLG00000007886
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008197
11240674 - 11270435
29762