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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11277531_11278197_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11277531 - 11278197
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CAATTTCTAATT
Flanking Amino Acid:
RCPSLVHLDLSDSVMLKPEC
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.8
0.63
0.9
72.5
36.7
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
51.4
0.12
1.6
65.86
39.2

Associated Gene:

Gene:
SKP2
Ensembl Gene ID:
ENSAPLG00000007705
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034022
11274121 - 11285684
11564
ENSAPLT00000020112
11274121 - 11285684
11564
ENSAPLT00000008015
11275705 - 11285734
10030