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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11278976_11282027_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11278976 - 11282027
Intron Length:
3052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCATT
Flanking Amino Acid:
EGLVLSDDILRLEELNLSWC
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.6
96.1
12.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.5
0.69
0.9
77
36.7
Minor 5ss
37.4
-1.4
2.8
50.6
45.9
Minor BPS
59.4
0.38
2
84.39
36.6

Associated Gene:

Gene:
SKP2
Ensembl Gene ID:
ENSAPLG00000007705
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034022
11274121 - 11285684
11564