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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11284927_11285102_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11284927 - 11285102
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGCG
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
APAAPAAAMHRKHLQEIPSS
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
57.6
41.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.7
0.67
0.7
77.3
24.7
Minor 5ss
23
-3.1
3.4
29.5
43.4
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SKP2
Ensembl Gene ID:
ENSAPLG00000007705
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008015
11275705 - 11285734
10030