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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11292883_11293326_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11292883 - 11293326
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TCATCACTGATT
Flanking Amino Acid:
VFILPLDVSTTIYNRCKLAV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.1
32.8
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
86.5
0.82
0.7
85.4
29.4
Minor 5ss
35.6
-1.6
3.1
50.4
45.6
Minor BPS
49
0
1.9
69.8
41.2

Associated Gene:

Gene:
LMBRD2
Ensembl Gene ID:
ENSAPLG00000007368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007681
11285772 - 11315631
29860