About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11295678_11296460_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11295678 - 11296460
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGTAT
U12 Branch Point Sequence:
TTTTTGGTATTG
Flanking Amino Acid:
VVYWTSQFLTWILLPFMQSY
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
56.4
0.16
1.6
57.4
49.1
Major PPT
76.5
0.6
0.8
69.3
36.9
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
41.7
-0.7
2.7
57.89
44.8

Associated Gene:

Gene:
LMBRD2
Ensembl Gene ID:
ENSAPLG00000007368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007681
11285772 - 11315631
29860