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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11300713_11301333_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11300713 - 11301333
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
GAATTTATGATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTAACCATAATT
Flanking Amino Acid:
EKSLVKLHKQVIYSVQRHRR
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
59.5
0.22
1.1
55
44.2
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
60.7
0.41
1.7
75.98
40.1

Associated Gene:

Gene:
LMBRD2
Ensembl Gene ID:
ENSAPLG00000007368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007681
11285772 - 11315631
29860