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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11302562_11303888_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11302562 - 11303888
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TCTACATTAAAA
Flanking Amino Acid:
EKTYNYIYIEMACFLTIFFL
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
92.2
0.95
0.6
84.9
29.9
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
59.7
0.3
1.8
70.98
40.5

Associated Gene:

Gene:
LMBRD2
Ensembl Gene ID:
ENSAPLG00000007368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007681
11285772 - 11315631
29860