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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11304508_11305183_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11304508 - 11305183
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CTCTTGTGAATT
Flanking Amino Acid:
RDAQPTAYTSIMGSMRVLSF
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
66.1
0.4
1
73
31.5
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
48.1
-0
2.1
67.49
44.2

Associated Gene:

Gene:
LMBRD2
Ensembl Gene ID:
ENSAPLG00000007368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007681
11285772 - 11315631
29860