Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11308424_11311888_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11308424 - 11311888

Intron Length:

3465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGAGCA

5'SS Class:

major

3'SS Sequence:

TGTCTTTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

TTACTCACAGCT

Flanking Amino Acid:

RQEEGENRRREWKERYGNRE

Intron Amino Acid Position:

592

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

61.4

37.5

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

83.9

0.76

0.8

77.1

37.1

Minor 5ss

36.4

-1.5

3.2

39.5

45.9

Minor BPS

45.3

-0.2

67.85

42.3

Associated Gene:

Gene:

LMBRD2

Ensembl Gene ID:

ENSAPLG00000007368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007681

11285772 - 11315631

29860