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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11311992_11313499_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11311992 - 11313499
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACATATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCTTTTACAT
Flanking Amino Acid:
SSFSETNTNRPLSKYTRSNG
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
87.9
29.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.5
0.62
0.9
74.8
39.1
Minor 5ss
47.5
-0.2
2.8
66.5
37.9
Minor BPS
57.2
0.3
1.7
77.95
38.5

Associated Gene:

Gene:
LMBRD2
Ensembl Gene ID:
ENSAPLG00000007368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007681
11285772 - 11315631
29860