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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11328820_11334951_F

Intron Information:

Intron Rank:
136830
Intron Class:
major
Intron Phase:
Intron Coordinates:
11328820 - 11334951
Intron Length:
6132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCATTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
100
1.24
0.5
100
0
Major PPT
85.5
0.8
0.8
77.5
36.5
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
49.7
0.06
1.7
64.21
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023682
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023822
11325798 - 11336203
10406