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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11343382_11344722_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11343382 - 11344722
Intron Length:
1341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TTCTCCTCAAAT
Flanking Amino Acid:
RGSAGIKGLGRVFRILDDDN
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
74.7
0.56
0.9
68.9
36.4
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
70.3
0.71
1.7
85.81
40.1

Associated Gene:

Gene:
CAPSL
Ensembl Gene ID:
ENSAPLG00000007315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007606
11343245 - 11353717
10473