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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11344901_11345727_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11344901 - 11345727
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCCG
5'SS Class:
major
3'SS Sequence:
TATTTCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATTTCCTTACAG
Flanking Amino Acid:
DFDEFLVTLRPPMSNARKEI
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
60
44.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
87
0.83
0.7
81
30.8
Minor 5ss
35.8
-1.6
2.8
39.4
39.6
Minor BPS
64.5
0.32
1.8
71.23
41.5

Associated Gene:

Gene:
CAPSL
Ensembl Gene ID:
ENSAPLG00000007315
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007606
11343245 - 11353717
10473