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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11404819_11404929_R

Intron Information:

Intron Rank:
32
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11404819 - 11404929
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGTTAC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTCTTTAAG
Flanking Amino Acid:
EKEEGLVPYIHFIKIYKKLG
Intron Amino Acid Position:
1577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
65.8
34.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
49.2
-0
2.4
66.5
39.1
Minor BPS
62.2
0.24
1.8
72.26
40.2

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007366
11404588 - 11488708
84121