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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11409458_11410139_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11409458 - 11410139
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTCCTTTTATA
Flanking Amino Acid:
PFDRLGCLIKFFFSLFADTR
Intron Amino Acid Position:
1453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.1
78.8
38.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.3
0.71
0.8
76.3
32.4
Minor 5ss
49.4
-0
2.5
66.9
44.4
Minor BPS
59.3
0.28
1.6
69.34
36.6

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007366
11404588 - 11488708
84121