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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11410233_11412031_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11410233 - 11412031
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATAATT
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
AAATAAATGACT
Flanking Amino Acid:
GLVTQECYMQVGLWFTGNED
Intron Amino Acid Position:
1422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
78.6
35.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
86.3
0.82
0.6
85.2
22.3
Minor 5ss
35.8
-1.6
3
50.3
45.5
Minor BPS
44.6
-0.3
2
62.97
40

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007366
11404588 - 11488708
84121