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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11412215_11415843_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11412215 - 11415843
Intron Length:
3629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
DAWMNLTLPDLQNLTSAFTV
Intron Amino Acid Position:
1361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.2
0.86
0.7
84.3
30.6
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007366
11404588 - 11488708
84121