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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11422275_11422371_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11422275 - 11422371
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAAC
5'SS Class:
major
3'SS Sequence:
GCCTCTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAGTACAAAAAT
Flanking Amino Acid:
FKLWPDKMREEFGEKEVSVL
Intron Amino Acid Position:
1853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
68.1
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.3
0.46
0.9
63.9
36.9
Minor 5ss
38
-1.4
3.2
50.7
46.2
Minor BPS
42.7
-0.4
2.1
59.24
43.1

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007512
11421673 - 11488708
67036