Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11434124_11437154_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11434124 - 11437154

Intron Length:

3031

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGTTAC

5'SS Class:

major

3'SS Sequence:

AATATTTTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

AATATTTTAACA

Flanking Amino Acid:

QEYFAALKHEEEATKSRLDL

Intron Amino Acid Position:

1202

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

35.7

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

71.9

0.49

66.5

43.1

Minor 5ss

46.1

-0.4

2.5

52.3

Minor BPS

0.56

1.2

71.35

34.1

Associated Gene:

Gene:

SPEF2

Ensembl Gene ID:

ENSAPLG00000007062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007512

11421673 - 11488708

67036

ENSAPLT00000007366

11404588 - 11488708

84121