About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11447798_11447903_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11447798 - 11447903
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCATAATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACA
Flanking Amino Acid:
HSIIYYLAGIRKNFQDYLKR
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.7
0.51
1
64.9
39.9
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
71.7
0.68
1.2
76.38
34.4

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007512
11421673 - 11488708
67036
ENSAPLT00000007366
11404588 - 11488708
84121