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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11454254_11456052_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11454254 - 11456052
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGAAAT
5'SS Class:
major
3'SS Sequence:
TTTTTGCCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TAATCCTGATTC
Flanking Amino Acid:
LLVAILLEAINQTPPEMGWI
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
76.2
32.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
74.6
0.55
0.9
71
34.7
Minor 5ss
42.9
-0.8
2.9
57.9
40.8
Minor BPS
55.7
0.16
1.7
65.72
39.6

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021887
11450049 - 11488708
38660
ENSAPLT00000007512
11421673 - 11488708
67036
ENSAPLT00000007366
11404588 - 11488708
84121