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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11461316_11465316_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11461316 - 11465316
Intron Length:
4001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATCAA
5'SS Class:
major
3'SS Sequence:
GTCATTTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTTATA
Flanking Amino Acid:
LDEKDYGEYKSMTGEWCPTE
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
69.2
37
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
74.7
0.55
1
68.7
41.2
Minor 5ss
39
-1.2
2.9
49.3
46.9
Minor BPS
57.8
0.24
1.9
72.3
39.6

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021887
11450049 - 11488708
38660
ENSAPLT00000007512
11421673 - 11488708
67036
ENSAPLT00000007366
11404588 - 11488708
84121