About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11467220_11468361_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11467220 - 11468361
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
AACAAAATTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAAACA
Flanking Amino Acid:
EFQKALDSEAALAKQEKIDC
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
53.6
0.08
1
41.5
42
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
54.6
0.14
2
71.45
40.9

Associated Gene:

Gene:
SPEF2
Ensembl Gene ID:
ENSAPLG00000007062
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021887
11450049 - 11488708
38660
ENSAPLT00000007512
11421673 - 11488708
67036
ENSAPLT00000007366
11404588 - 11488708
84121