Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11474974_11477443_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11474974 - 11477443

Intron Length:

2470

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGACTAAT

5'SS Class:

strong_major

3'SS Sequence:

GTTAAATACTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

ATTATGTTAAAT

Flanking Amino Acid:

EEQRAQDIEKHRIGRRRQNE

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

1.1

83.1

30.9

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

63.6

0.31

1.1

59.4

45.1

Minor 5ss

37.5

-1.4

2.8

50.6

45.9

Minor BPS

52.4

0.15

2.2

76.12

40.2

Associated Gene:

Gene:

SPEF2

Ensembl Gene ID:

ENSAPLG00000007062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021887

11450049 - 11488708

38660

ENSAPLT00000007512

11421673 - 11488708

67036

ENSAPLT00000007366

11404588 - 11488708

84121