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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1151213_1154437_R

Intron Information:

Intron Rank:
143421
Intron Class:
major
Intron Phase:
Intron Coordinates:
1151213 - 1154437
Intron Length:
3225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCG
5'SS Class:
strong_major
3'SS Sequence:
GATTCAATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AATGATTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
38.4
Major BPS
68
0.45
1
57.8
39
Major PPT
70.9
0.47
1
60
44.7
Minor 5ss
33.1
-1.9
3.1
41.8
44.7
Minor BPS
48
-0
1.7
64.69
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024470
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031583
1150265 - 1154780
4516