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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_116257_116444_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
116257 - 116444
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTGCCCATAACT
Flanking Amino Acid:
IKLENNNFVTADLLLLSSSE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74.8
0.56
1
72.5
42.4
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
63.9
0.51
1.7
78.55
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002395
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002472
93540 - 123944
30405