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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11640808_11642314_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11640808 - 11642314
Intron Length:
1507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GTACCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTAAACTTACTA
Flanking Amino Acid:
SSEKSIQIPSEELPPEKPTI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.3
0.59
0.9
69.5
36.5
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
52.1
0.06
1.8
66.11
40.2

Associated Gene:

Gene:
PRLR
Ensembl Gene ID:
ENSAPLG00000006942
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007238
11564912 - 11658150
93239