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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11642448_11644527_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11642448 - 11644527
Intron Length:
2080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATAAGT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GATTCTTTCATT
Flanking Amino Acid:
TNYTLLYSKEGEEQVYECPD
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
68.3
42.6
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
34.8
-1.7
3
41.5
44.7
Minor BPS
62.7
0.48
1.7
77.58
39.2

Associated Gene:

Gene:
PRLR
Ensembl Gene ID:
ENSAPLG00000006942
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007238
11564912 - 11658150
93239