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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11647315_11648140_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11647315 - 11648140
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATTTCTTTCATA
Flanking Amino Acid:
SSEKYIQIPNDFRVKDMIVW
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81
0.7
0.7
76.8
31.2
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
66.4
0.51
1.7
77.18
34.1

Associated Gene:

Gene:
PRLR
Ensembl Gene ID:
ENSAPLG00000006942
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007238
11564912 - 11658150
93239