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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11648241_11650551_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11648241 - 11650551
Intron Length:
2311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GTTTTGTTAATT
Flanking Amino Acid:
MSWTMVLKGYRMIAFILPPV
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
81.9
0.72
0.9
81.2
36.5
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
PRLR
Ensembl Gene ID:
ENSAPLG00000006942
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007238
11564912 - 11658150
93239