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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11650622_11651256_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11650622 - 11651256
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTATGCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AATATCTTATTT
Flanking Amino Acid:
IKGIDTHLLETGKSEELLSA
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
75
0.56
1
70.4
41.1
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
57.5
0.31
1.6
71.99
39

Associated Gene:

Gene:
PRLR
Ensembl Gene ID:
ENSAPLG00000006942
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007238
11564912 - 11658150
93239