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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11665070_11665376_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11665070 - 11665376
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
GTTCTACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
CTTGTTCTACCT
Flanking Amino Acid:
IVTVSVGHCHPKVTMAIQKQ
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
67.4
44
Major BPS
62
0.3
1
53
34.1
Major PPT
77.7
0.62
0.9
70.7
35
Minor 5ss
38.2
-1.3
3.3
53.8
43.6
Minor BPS
46.3
-0.2
2
67.08
44.4

Associated Gene:

Gene:
AGXT2
Ensembl Gene ID:
ENSAPLG00000006807
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007067
11663309 - 11674570
11262