Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11666702_11667815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11666702 - 11667815

Intron Length:

1114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGGTG

5'SS Class:

major

3'SS Sequence:

TCTGTTTGCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGGAA

U12 Branch Point Sequence:

TCTGTTTGCACA

Flanking Amino Acid:

YTRNFDIISFRGAYHGGSPY

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

69.7

40.9

Major BPS

62.2

0.3

1.4

63.4

44.3

Major PPT

75.9

0.58

0.9

71.5

38.4

Minor 5ss

32.9

-2

3.6

46.5

48.8

Minor BPS

45.8

-0.3

1.9

58.67

41.9

Associated Gene:

Gene:

AGXT2

Ensembl Gene ID:

ENSAPLG00000006807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007067

11663309 - 11674570

11262