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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11676962_11677667_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11676962 - 11677667
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
CATTCTGTAAAA
Flanking Amino Acid:
AKASSEHPTTNEVPIHCVTC
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
67.2
39.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
86.2
0.81
0.6
81.9
22.9
Minor 5ss
40.1
-1.1
2.8
50
46.3
Minor BPS
50.8
0.02
2.1
65.36
41.2

Associated Gene:

Gene:
DNAJC21
Ensembl Gene ID:
ENSAPLG00000006757
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007018
11676797 - 11691186
14390