Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11677744_11678152_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11677744 - 11678152

Intron Length:

409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGCTGA

5'SS Class:

major

3'SS Sequence:

CTTTGTCTATCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAT

U12 Branch Point Sequence:

CTTTGTCTATCA

Flanking Amino Acid:

QVNEAQSEVKSSAKPKGKKA

Intron Amino Acid Position:

456

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

62.2

Major BPS

71.2

0.53

37.5

Major PPT

79.1

0.66

0.9

78.1

35.1

Minor 5ss

36.7

-1.5

3.2

47.2

48.2

Minor BPS

45.5

-0.3

2.2

63.28

43.5

Associated Gene:

Gene:

DNAJC21

Ensembl Gene ID:

ENSAPLG00000006757

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007018

11676797 - 11691186

14390