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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11680702_11681058_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11680702 - 11681058
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTCTCTCCAATC
Flanking Amino Acid:
EEQETKEGIEDKLSDEAEES
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
41.1
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
37
-1.5
3.6
55.4
48.8
Minor BPS
48.2
-0.1
1.8
59.85
39.7

Associated Gene:

Gene:
DNAJC21
Ensembl Gene ID:
ENSAPLG00000006757
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007018
11676797 - 11691186
14390