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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11681211_11681756_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11681211 - 11681756
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
ATTCTACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TATTATTCTACT
Flanking Amino Acid:
LRRQQKLKQAKLAEQYKEQS
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
81
0.7
0.8
73.8
35.2
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
49.3
0.03
2
74.44
42.2

Associated Gene:

Gene:
DNAJC21
Ensembl Gene ID:
ENSAPLG00000006757
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007018
11676797 - 11691186
14390