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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11693222_11693755_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11693222 - 11693755
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TATTCTTTTACT
Flanking Amino Acid:
DNRIWFRNYQIIEEDASLVE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
77.3
37.8
Major BPS
62
0.3
1
62.3
30.4
Major PPT
86.5
0.82
0.7
81.8
28.5
Minor 5ss
30.8
-2.2
3.1
41.8
44.7
Minor BPS
75.1
0.87
1.5
89.02
35.4

Associated Gene:

Gene:
BRIX1
Ensembl Gene ID:
ENSAPLG00000006647
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006895
11692524 - 11696989
4466