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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11693858_11694114_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11693858 - 11694114
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTGTCTTTTATT
Flanking Amino Acid:
YALLKELFIQIFSTPQYHPK
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.8
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.3
0.88
0.7
84.4
29
Minor 5ss
35.6
-1.6
3
50.5
45.8
Minor BPS
61.9
0.45
1.6
74.98
42.6

Associated Gene:

Gene:
BRIX1
Ensembl Gene ID:
ENSAPLG00000006647
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006895
11692524 - 11696989
4466