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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11694166_11694261_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11694166 - 11694261
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTATATAAAACT
Flanking Amino Acid:
GSRPLLSFDPTFDKEPHYAL
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
46.3
-0.2
2
67.67
42.6

Associated Gene:

Gene:
BRIX1
Ensembl Gene ID:
ENSAPLG00000006647
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006895
11692524 - 11696989
4466