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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11695617_11696005_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11695617 - 11696005
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCCTTCTCAATG
Flanking Amino Acid:
LRTLMPHSKADTKMDRKDKL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
89.2
0.88
0.7
81.2
36.5
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
50.8
-0.1
1.6
51.39
43.7

Associated Gene:

Gene:
BRIX1
Ensembl Gene ID:
ENSAPLG00000006647
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006895
11692524 - 11696989
4466