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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11698895_11699926_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11698895 - 11699926
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAGA
Flanking Amino Acid:
LTIFGASSTPGTPTALKMCY
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
61.2
0.35
1.7
75.34
36.3

Associated Gene:

Gene:
RAD1
Ensembl Gene ID:
ENSAPLG00000006565
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006818
11697140 - 11703660
6521