About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11700649_11700948_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11700649 - 11700948
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
AFHCNQTQTNRYKISLIKPS
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
RAD1
Ensembl Gene ID:
ENSAPLG00000006565
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006818
11697140 - 11703660
6521