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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11701135_11702503_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
11701135 - 11702503
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTACGTTCT
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTCCTTTCACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
65.5
41.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
43.8
-0.7
3
59.8
44.6
Minor BPS
62
0.37
1.8
72.26
40.2

Associated Gene:

Gene:
RAD1
Ensembl Gene ID:
ENSAPLG00000006565
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006818
11697140 - 11703660
6521