Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_11715473_11715724_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11715473 - 11715724

Intron Length:

252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTTA

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTTGTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGAAT

U12 Branch Point Sequence:

AATTCAGTCACC

Flanking Amino Acid:

YRMHLLYAVQGQMDEDVQKV

Intron Amino Acid Position:

913

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

77.5

33.3

Major BPS

74.6

0.61

1.4

34.5

Major PPT

71.2

0.48

0.9

64.6

36.5

Minor 5ss

46.4

-0.4

3.1

63.9

47.7

Minor BPS

44.9

-0.4

2.5

63.22

41.9

Associated Gene:

Gene:

RAI14

Ensembl Gene ID:

ENSAPLG00000006444

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019039

11714084 - 11788824

74741

ENSAPLT00000006694

11714084 - 11777002

62919